Student/Young Researcher Presentations

Oral Presentations

  • Towards Comprehensive Membrane Proteomic Signature: A Multiplexed Quantitation Strategy and Its Opportunities for Mining Therapeutic Targets in Diseases
    Chia-Li Han (Academia Sinica)
  • Predicting RNA-binding sites in proteins using support vector machines and evolutionary information
    Emily Chia-Yu Su (Academia Sinica)
  • Exploring the genetic architecture buffered by Hsp90 in the yeast genome
    Yu-ying Hsieh (National Yang Ming University)

  • Mining of RNA Degradome: Identification of Small Nucleolar RNAs by analyzing of Arabidopsis small RNA sequencing data
    Ho-Ming Chen (Academia Sinica)

  • Comparative Analysis of Co-expressed Protein Interaction Networks Reveals Heart Failure Related Modules
    Chen-Ching Lin (National Yang-Ming University)

  • Uncovering the Tertiary Protein Organization Based on Structural Units Networks
    Chi-Hua Tung (National Chiao Tung University)

  • The study of the ion conduction processes in K+ channels by steered molecular dynamics simulations
    Jean-Fang Gwan (Academia Sinica)

  • Membrane proteome profiling of Escherichia coli using chemical digestion-based shotgun proteomics
    Mio Iwasaki (Keio University)

  • Multiscale Simulations of the molecular motor F0
    Yang-Shan Lin (National Taiwan University)

  • Identifying novel stage-specific cis-regulatory elements in intestine development of C. elegans early embryogenesis
    Akihiro Mori (Graduate University for Advanced Studies )

  • Akt pathway serves as a series of low pass filters
    Kazuhiro Fujita (University of Tokyo)

  • Construction of insect sequence data base and new pipeline system for expressed sequence tag analysis Yong
    Yong Hun Jo (Chonnam National University)

JSBi Session

  • Statistical Analysis and Mathematical Modeling of Non Coding RNA-Protein Interaction Networks
    Nao Araki (Future University Hakodate)

Poster Presentation

  • A-1 Identification of novel inhibitors for ubiquitin C-terminal hydrolase-L3 by virtual screening
    Kazunori Hirayama

  • A-2 Homology Modeling and Docking Analysis of hERG Potassium Channel
    Yo-Hsuan Chen

  • A-3 Computational Studies for Ligand Recognition Mechanisms of Drug Metabolizing Enzymes by Using Molecular Simulations
    Akifumi Oda

  • A-4 Structural Prediction of the Adenosine A2A Receptor and Comparison of Its Resting State and Active State Conformations
    Eric Liu

  • A-5 Antibody Canonical Structures and Their Relational Database
    Daisuke Kuroda

  • A-6 CPDB: a Database of Circular Permutation in Proteins
    Wei-Cheng Lo

  • A-7 Structural Similarity Search Based on Protein Rigidity
    Chien-hua Shih

  • A-8 Multiple Structural Alignment Aided by Ramachandran Sequential Transformation
    Che-Wei Chang

  • A-9 The Study of the Structure-dynamics Relationship Using Molecular Dynamics Simulations
    Tsun-Tsao Huang

  • A-10 Weighted Multiple Sequence Alignment Among Starch-Binding Carbohydrate Binding Modules for Functional Binding Site Analysis
    Wei-Yao Chou

  • B-1 Identifying Potential Immunodominant Positions and Predicting Antigenic Variants of Influenza A/H1N1 Viruses
    Guan-Yuan Liou

  • B-2 Replacement Finder: Sequence Comparison to Identify Restriction Genes
    Mikihiko Kawai

  • B-3 Different susceptibility of Crohnfs disease candidate genes between Europeans and Japanese
    Shigeki Nakagome

  • B-4 Rule for Predicting Proline Hydroxylation
    Chuan-Hock Koh

  • B-5 Sequence Analysis of Nuclear Export Signals
    Szu-Chin Fu

  • B-6 Considering Alu Transposition in the Light of Nuclear Environment
    Hiroki Ashida

  • B-7 Overrepresented Motifs in Highly Conserved Non-protein-coding Regions of Vertebrate Genomes
    Naoki Osato

  • B-8 MRT: a Tool for Identifying MicroRNA Targets in Metazoan
    Sheng-Da Hsu

  • C-1 A Sampling Approach for Predicting Single-Stranded Regions in the Consensus Structure of Aligned RNA Sequences
    Akito Taneda

  • C-2 Improved Contact Prediction Using a Hierarchical Approach with Neural Network
    Yi-Yuan Chiu

  • C-3 High Accuracy Prediction of Ligand-binding Sites on Protein Structures with i-SITE
    Mizuki Morita

  • C-4 Predicting Helix-helix Interactions from Residue Contacts in Membrane Proteins
    Allan Lo

  • C-5 Discrimination of -barrel Membrane Proteins and Their Membrane Spanning Segments by Using RBF Networks
    Yu-Yen Ou

  • C-6 Determination of Conformational Degrees of Freedom of Small Compounds by Quantum Chemical Calculations
    Jui-Chih Wang

  • C-7 A New Modeling Method in Feature Construction for the HSQC Spectra Screening Problem
    Hiromi Arai

  • C-8 A Decision Support System for the Cardiovascular Disease Using Bioinformatics Approach
    Wei-Chung Shia

  • D-1 CADLIVE Supporting Network Construction, Simulation, and Analysis of Biological Systems
    Kazuhiro Maeda

  • D-2 Simulation Analysis of Spike-Timing Dependent Synaptic Plasticity from Signal Transduction Pathway to Visual Neuronal Network
    Minoru Honda

  • D-3 Prediction of Transcriptional Compensatory Gene Pairs Without Sequence Homology in Yeast
    Shu-Hsi Lin

  • D-4 Rapid Pathway Evolution Facilitated by Horizontal Gene Transfers Across Prokaryotic Lineages
    Wataru Iwasaki

  • D-5 Rank Correlations of Housekeeping Genes
    Tzun-Wen Shaw

  • D-6 Recovery of Synchronous Oscillation from Induced Randomness in the Zebrafish Segmentation Clock
    Yutaro Kii

  • E-1 Towards Comprehensive Membrane Proteomic Signature: A Multiplexed Quantitation Strategy and Its Opportunities for Mining Therapeutic Targets in Diseases
    Chia-Li Han

  • E-2 Comparative Analysis of Co-expressed Protein Interaction Networks Reveals Heart Failure Related Modules
    Chen-Ching Lin

  • E-3 Predicting RNA-binding Sites in Proteins Using Support Vector Machines and Evolutionary Information
    Emily Chia-Yu Su

  • E-4 Membrane Proteome Profiling of Escherichia coli Using Chemical Digestion-based Shotgun Proteomics"
    Mio Iwasaki

  • E-5 Akt Pathway Serves As a Series of Low Pass Filters
    Kazuhiro Fujita

 

 

 

 

The 2nd Taiwan-Japan Young Researchers Conference on Computational and Systems Biology
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